re-run process workflow

process/DESCRIPTION

@@ -31,7 +31,11 @@ Imports:
     docopt,
     duckdb,
     fastLink,
+    gt,
     here,
     lgr,
+    RSQLite,
+    snakecase,
+    tidygeocoder,
     tidyr,
     visNetwork

process/renv.lock

@@ -15,14 +15,14 @@
   "Packages": {
     "DBI": {
       "Package": "DBI",
-      "Version": "1.1.3",
+      "Version": "1.2.2",
       "Source": "Repository",
-      "Repository": "CRAN",
+      "Repository": "RSPM",
       "Requirements": [
         "R",
         "methods"
       ],
-      "Hash": "b2866e62bab9378c3cc9476a1954226b"
+      "Hash": "164809cd72e1d5160b4cb3aa57f510fe"
     },
     "MASS": {
       "Package": "MASS",
@@ -76,6 +76,25 @@
       ],
       "Hash": "45f0398006e83a5b10b72a90663d8d8c"
     },
+    "RSQLite": {
+      "Package": "RSQLite",
+      "Version": "2.3.5",
+      "Source": "Repository",
+      "Repository": "RSPM",
+      "Requirements": [
+        "DBI",
+        "R",
+        "bit64",
+        "blob",
+        "cpp11",
+        "memoise",
+        "methods",
+        "pkgconfig",
+        "plogr",
+        "rlang"
+      ],
+      "Hash": "f5a75d57e0a3014a6ef537ac04a80fc6"
+    },
     "Rcpp": {
       "Package": "Rcpp",
       "Version": "1.0.11",
@@ -114,6 +133,19 @@
       ],
       "Hash": "acb0a5bf38490f26ab8661b467f4f53a"
     },
+    "V8": {
+      "Package": "V8",
+      "Version": "4.4.2",
+      "Source": "Repository",
+      "Repository": "RSPM",
+      "Requirements": [
+        "Rcpp",
+        "curl",
+        "jsonlite",
+        "utils"
+      ],
+      "Hash": "ca98390ad1cef2a5a609597b49d3d042"
+    },
     "adagio": {
       "Package": "adagio",
       "Version": "0.9.2",
@@ -199,6 +231,16 @@
       ],
       "Hash": "0c54cf3a08cc0e550fbd64ad33166143"
     },
+    "bigD": {
+      "Package": "bigD",
+      "Version": "0.2.0",
+      "Source": "Repository",
+      "Repository": "RSPM",
+      "Requirements": [
+        "R"
+      ],
+      "Hash": "93637e906f3fe962413912c956eb44db"
+    },
     "bit": {
       "Package": "bit",
       "Version": "4.0.5",
@@ -223,6 +265,13 @@
       ],
       "Hash": "9fe98599ca456d6552421db0d6772d8f"
     },
+    "bitops": {
+      "Package": "bitops",
+      "Version": "1.0-7",
+      "Source": "Repository",
+      "Repository": "RSPM",
+      "Hash": "b7d8d8ee39869c18d8846a184dd8a1af"
+    },
     "blob": {
       "Package": "blob",
       "Version": "1.2.4",
@@ -282,14 +331,14 @@
     },
     "cli": {
       "Package": "cli",
-      "Version": "3.6.1",
+      "Version": "3.6.2",
       "Source": "Repository",
-      "Repository": "CRAN",
+      "Repository": "RSPM",
       "Requirements": [
         "R",
         "utils"
       ],
-      "Hash": "89e6d8219950eac806ae0c489052048a"
+      "Hash": "1216ac65ac55ec0058a6f75d7ca0fd52"
     },
     "clipr": {
       "Package": "clipr",
@@ -347,6 +396,13 @@
       ],
       "Hash": "f20c47fd52fae58b4e377c37bb8c335b"
     },
+    "commonmark": {
+      "Package": "commonmark",
+      "Version": "1.9.1",
+      "Source": "Repository",
+      "Repository": "RSPM",
+      "Hash": "5d8225445acb167abf7797de48b2ee3c"
+    },
     "cpp11": {
       "Package": "cpp11",
       "Version": "0.4.6",
@@ -442,17 +498,16 @@
     },
     "desc": {
       "Package": "desc",
-      "Version": "1.4.2",
+      "Version": "1.4.3",
       "Source": "Repository",
-      "Repository": "CRAN",
+      "Repository": "RSPM",
       "Requirements": [
         "R",
         "R6",
         "cli",
-        "rprojroot",
         "utils"
       ],
-      "Hash": "6b9602c7ebbe87101a9c8edb6e8b6d21"
+      "Hash": "99b79fcbd6c4d1ce087f5c5c758b384f"
     },
     "digest": {
       "Package": "digest",
@@ -491,9 +546,9 @@
     },
     "dplyr": {
       "Package": "dplyr",
-      "Version": "1.1.3",
+      "Version": "1.1.4",
       "Source": "Repository",
-      "Repository": "CRAN",
+      "Repository": "RSPM",
       "Requirements": [
         "R",
         "R6",
@@ -510,7 +565,7 @@
         "utils",
         "vctrs"
       ],
-      "Hash": "e85ffbebaad5f70e1a2e2ef4302b4949"
+      "Hash": "fedd9d00c2944ff00a0e2696ccf048ec"
     },
     "duckdb": {
       "Package": "duckdb",
@@ -777,14 +832,14 @@
     },
     "glue": {
       "Package": "glue",
-      "Version": "1.6.2",
+      "Version": "1.7.0",
       "Source": "Repository",
-      "Repository": "CRAN",
+      "Repository": "RSPM",
       "Requirements": [
         "R",
         "methods"
       ],
-      "Hash": "4f2596dfb05dac67b9dc558e5c6fba2e"
+      "Hash": "e0b3a53876554bd45879e596cdb10a52"
     },
     "graphlayouts": {
       "Package": "graphlayouts",
@@ -813,6 +868,36 @@
       ],
       "Hash": "7d7f283939f563670a697165b2cf5560"
     },
+    "gt": {
+      "Package": "gt",
+      "Version": "0.10.1",
+      "Source": "Repository",
+      "Repository": "RSPM",
+      "Requirements": [
+        "R",
+        "base64enc",
+        "bigD",
+        "bitops",
+        "cli",
+        "commonmark",
+        "dplyr",
+        "fs",
+        "glue",
+        "htmltools",
+        "htmlwidgets",
+        "juicyjuice",
+        "magrittr",
+        "markdown",
+        "reactable",
+        "rlang",
+        "sass",
+        "scales",
+        "tidyselect",
+        "vctrs",
+        "xml2"
+      ],
+      "Hash": "03009c105dfae79460b8eb9d8cf791e4"
+    },
     "gtable": {
       "Package": "gtable",
       "Version": "0.3.4",
@@ -907,24 +992,41 @@
       ],
       "Hash": "a865aa85bcb2697f47505bfd70422471"
     },
+    "httr": {
+      "Package": "httr",
+      "Version": "1.4.7",
+      "Source": "Repository",
+      "Repository": "RSPM",
+      "Requirements": [
+        "R",
+        "R6",
+        "curl",
+        "jsonlite",
+        "mime",
+        "openssl"
+      ],
+      "Hash": "ac107251d9d9fd72f0ca8049988f1d7f"
+    },
     "httr2": {
       "Package": "httr2",
-      "Version": "0.2.3",
+      "Version": "1.0.0",
       "Source": "Repository",
-      "Repository": "CRAN",
+      "Repository": "RSPM",
       "Requirements": [
         "R",
         "R6",
         "cli",
         "curl",
         "glue",
+        "lifecycle",
         "magrittr",
         "openssl",
         "rappdirs",
         "rlang",
+        "vctrs",
         "withr"
       ],
-      "Hash": "193bb297368afbbb42dc85784a46b36e"
+      "Hash": "e2b30f1fc039a0bab047dd52bb20ef71"
     },
     "igraph": {
       "Package": "igraph",
@@ -990,6 +1092,16 @@
       ],
       "Hash": "e1b9c55281c5adc4dd113652d9e26768"
     },
+    "juicyjuice": {
+      "Package": "juicyjuice",
+      "Version": "0.1.0",
+      "Source": "Repository",
+      "Repository": "RSPM",
+      "Requirements": [
+        "V8"
+      ],
+      "Hash": "3bcd11943da509341838da9399e18bce"
+    },
     "knitr": {
       "Package": "knitr",
       "Version": "1.45",
@@ -1086,6 +1198,19 @@
       ],
       "Hash": "7ce2733a9826b3aeb1775d56fd305472"
     },
+    "markdown": {
+      "Package": "markdown",
+      "Version": "1.12",
+      "Source": "Repository",
+      "Repository": "RSPM",
+      "Requirements": [
+        "R",
+        "commonmark",
+        "utils",
+        "xfun"
+      ],
+      "Hash": "765cf53992401b3b6c297b69e1edb8bd"
+    },
     "memoise": {
       "Package": "memoise",
       "Version": "2.0.1",
@@ -1207,6 +1332,13 @@
       ],
       "Hash": "01f28d4278f15c76cddbea05899c5d6f"
     },
+    "plogr": {
+      "Package": "plogr",
+      "Version": "0.2.0",
+      "Source": "Repository",
+      "Repository": "RSPM",
+      "Hash": "09eb987710984fc2905c7129c7d85e65"
+    },
     "plotrix": {
       "Package": "plotrix",
       "Version": "3.8-4",
@@ -1303,6 +1435,31 @@
       ],
       "Hash": "5e3c5dc0b071b21fa128676560dbe94d"
     },
+    "reactR": {
+      "Package": "reactR",
+      "Version": "0.5.0",
+      "Source": "Repository",
+      "Repository": "RSPM",
+      "Requirements": [
+        "htmltools"
+      ],
+      "Hash": "c9014fd1a435b2d790dd506589cb24e5"
+    },
+    "reactable": {
+      "Package": "reactable",
+      "Version": "0.4.4",
+      "Source": "Repository",
+      "Repository": "RSPM",
+      "Requirements": [
+        "R",
+        "digest",
+        "htmltools",
+        "htmlwidgets",
+        "jsonlite",
+        "reactR"
+      ],
+      "Hash": "6069eb2a6597963eae0605c1875ff14c"
+    },
     "readr": {
       "Package": "readr",
       "Version": "2.1.4",
@@ -1328,24 +1485,24 @@
     },
     "renv": {
       "Package": "renv",
-      "Version": "1.0.3",
+      "Version": "1.0.5",
       "Source": "Repository",
-      "Repository": "CRAN",
+      "Repository": "RSPM",
       "Requirements": [
         "utils"
       ],
-      "Hash": "41b847654f567341725473431dd0d5ab"
+      "Hash": "32c3f93e8360f667ca5863272ec8ba6a"
     },
     "rlang": {
       "Package": "rlang",
-      "Version": "1.1.2",
+      "Version": "1.1.3",
       "Source": "Repository",
-      "Repository": "CRAN",
+      "Repository": "RSPM",
       "Requirements": [
         "R",
         "utils"
       ],
-      "Hash": "50a6dbdc522936ca35afc5e2082ea91b"
+      "Hash": "42548638fae05fd9a9b5f3f437fbbbe2"
     },
     "rmarkdown": {
       "Package": "rmarkdown",
@@ -1413,6 +1570,18 @@
       ],
       "Hash": "906cb23d2f1c5680b8ce439b44c6fa63"
     },
+    "snakecase": {
+      "Package": "snakecase",
+      "Version": "0.11.1",
+      "Source": "Repository",
+      "Repository": "RSPM",
+      "Requirements": [
+        "R",
+        "stringi",
+        "stringr"
+      ],
+      "Hash": "58767e44739b76965332e8a4fe3f91f1"
+    },
     "stringdist": {
       "Package": "stringdist",
       "Version": "0.9.12",
@@ -1518,6 +1687,22 @@
       ],
       "Hash": "a84e2cc86d07289b3b6f5069df7a004c"
     },
+    "tidygeocoder": {
+      "Package": "tidygeocoder",
+      "Version": "1.0.5",
+      "Source": "Repository",
+      "Repository": "RSPM",
+      "Requirements": [
+        "R",
+        "dplyr",
+        "httr",
+        "jsonlite",
+        "lifecycle",
+        "progress",
+        "tibble"
+      ],
+      "Hash": "44fd552dae5b20c4224e895449e3827a"
+    },
     "tidygraph": {
       "Package": "tidygraph",
       "Version": "1.2.3",
@@ -1542,9 +1727,9 @@
     },
     "tidyr": {
       "Package": "tidyr",
-      "Version": "1.3.0",
+      "Version": "1.3.1",
       "Source": "Repository",
-      "Repository": "CRAN",
+      "Repository": "RSPM",
       "Requirements": [
         "R",
         "cli",
@@ -1561,7 +1746,7 @@
         "utils",
         "vctrs"
       ],
-      "Hash": "e47debdc7ce599b070c8e78e8ac0cfcf"
+      "Hash": "915fb7ce036c22a6a33b5a8adb712eb1"
     },
     "tidyselect": {
       "Package": "tidyselect",
@@ -1741,6 +1926,19 @@
       ],
       "Hash": "460a5e0fe46a80ef87424ad216028014"
     },
+    "xml2": {
+      "Package": "xml2",
+      "Version": "1.3.6",
+      "Source": "Repository",
+      "Repository": "RSPM",
+      "Requirements": [
+        "R",
+        "cli",
+        "methods",
+        "rlang"
+      ],
+      "Hash": "1d0336142f4cd25d8d23cd3ba7a8fb61"
+    },
     "yaml": {
       "Package": "yaml",
       "Version": "2.3.7",

process/renv/activate.R

@@ -2,7 +2,7 @@
 local({
 
   # the requested version of renv
-  version <- "1.0.3"
+  version <- "1.0.5"
   attr(version, "sha") <- NULL
 
   # the project directory
@@ -31,6 +31,14 @@ local({
     if (!is.null(override))
       return(override)
 
+    # if we're being run in a context where R_LIBS is already set,
+    # don't load -- presumably we're being run as a sub-process and
+    # the parent process has already set up library paths for us
+    rcmd <- Sys.getenv("R_CMD", unset = NA)
+    rlibs <- Sys.getenv("R_LIBS", unset = NA)
+    if (!is.na(rlibs) && !is.na(rcmd))
+      return(FALSE)
+
     # next, check environment variables
     # TODO: prefer using the configuration one in the future
     envvars <- c(
@@ -50,9 +58,22 @@ local({
 
   })
 
-  if (!enabled)
+  # bail if we're not enabled
+  if (!enabled) {
+
+    # if we're not enabled, we might still need to manually load
+    # the user profile here
+    profile <- Sys.getenv("R_PROFILE_USER", unset = "~/.Rprofile")
+    if (file.exists(profile)) {
+      cfg <- Sys.getenv("RENV_CONFIG_USER_PROFILE", unset = "TRUE")
+      if (tolower(cfg) %in% c("true", "t", "1"))
+        sys.source(profile, envir = globalenv())
+    }
+
     return(FALSE)
 
+  }
+
   # avoid recursion
   if (identical(getOption("renv.autoloader.running"), TRUE)) {
     warning("ignoring recursive attempt to run renv autoloader")
@@ -1041,7 +1062,7 @@ local({
     # if jsonlite is loaded, use that instead
     if ("jsonlite" %in% loadedNamespaces()) {
   
-      json <- catch(renv_json_read_jsonlite(file, text))
+      json <- tryCatch(renv_json_read_jsonlite(file, text), error = identity)
       if (!inherits(json, "error"))
         return(json)
   
@@ -1050,7 +1071,7 @@ local({
     }
   
     # otherwise, fall back to the default JSON reader
-    json <- catch(renv_json_read_default(file, text))
+    json <- tryCatch(renv_json_read_default(file, text), error = identity)
     if (!inherits(json, "error"))
       return(json)
   
@@ -1063,14 +1084,14 @@ local({
   }
   
   renv_json_read_jsonlite <- function(file = NULL, text = NULL) {
-    text <- paste(text %||% read(file), collapse = "\n")
+    text <- paste(text %||% readLines(file, warn = FALSE), collapse = "\n")
     jsonlite::fromJSON(txt = text, simplifyVector = FALSE)
   }
   
   renv_json_read_default <- function(file = NULL, text = NULL) {
   
     # find strings in the JSON
-    text <- paste(text %||% read(file), collapse = "\n")
+    text <- paste(text %||% readLines(file, warn = FALSE), collapse = "\n")
     pattern <- '["](?:(?:\\\\.)|(?:[^"\\\\]))*?["]'
     locs <- gregexpr(pattern, text, perl = TRUE)[[1]]
   
@@ -1118,14 +1139,14 @@ local({
     map <- as.list(map)
   
     # remap strings in object
-    remapped <- renv_json_remap(json, map)
+    remapped <- renv_json_read_remap(json, map)
   
     # evaluate
     eval(remapped, envir = baseenv())
   
   }
   
-  renv_json_remap <- function(json, map) {
+  renv_json_read_remap <- function(json, map) {
   
     # fix names
     if (!is.null(names(json))) {
@@ -1152,7 +1173,7 @@ local({
     # recurse
     if (is.recursive(json)) {
       for (i in seq_along(json)) {
-        json[i] <- list(renv_json_remap(json[[i]], map))
+        json[i] <- list(renv_json_read_remap(json[[i]], map))
       }
     }
   

reports/2023-12-17_about-tables/about-tables.qmd

@@ -25,7 +25,9 @@ editor:
 
 ```{r setup}
 #| include: false
-library(tidyverse)
+library(dplyr)
+library(purrr)
+library(tidyr)
 library(fs)
 pkgload::load_all(here::here("process"))
 ```