add validation/exploration script

reports/2023-10-07_organizing/2023-10-07_organizing.R

+#+ setup
+library(tidyverse)
+library(fs)
+load_all(here::here("process"))
+
+#+ candidates
+john_bell <- "STA-8S285O-C-001"
+dan_forest <- "STA-M4HR0Y-C-001"
+mitch_setzer <- "STA-C1877N-C-001"
+
+#+ load-data
+cf <- cf_db_create()
+
+cf_dm <- dm::dm(!!!cf)
+cf_dm <- dm::dm_add_pk(cf_dm, "report_list", c("sboe_id", "report_id"))
+
+## Report List vs Cover ----
+
+#+ basic-validation
+cf$report_list |> count()
+cf$cover |> count()
+
+## When de-duplicated there should be no more reports in "cover" than in "report_list"
+cf$report_list |> distinct(report_id, sboe_id) |> count()
+cf$cover |> distinct(report_id, sboe_id) |> count()
+
+# duplicated sboe/report ids
+duplicated <-
+  cf$cover |>
+  semi_join(
+    cf$cover |> count(sboe_id, report_id) |> filter(n > 1),
+    by = c("sboe_id", "report_id")
+  )
+
+# are all of the duplicated rows full duplicates? yes, both are the same.
+# => I'm going to go back and call `distinct()` when adding the file
+duplicated |> distinct(sboe_id, report_id) |> count()
+duplicated |> distinct() |> count()
+
+# The filed date is missing from some listed reports
+# => I'm going to leave this alone
+cf$report_list |> filter(is.na(received))
+
+# How many reports are missing from cover?
+cf$report_list |>
+  anti_join(cf$cover, by = c("report_id", "sboe_id")) |>
+  collect() |>
+  arrange(sboe_id, year, report_id) |>
+  select(1:5, received) |>
+  mutate(path = glue::glue("../../data-raw/reports/{sboe_id}/all/{report_id}_{received}.txt"))
+
+#> * `../../data-raw/reports/STA-C3372N-C-001/all/174237_2020-04-01.txt`: missing cover
+#> * `../../data-raw/reports/STA-C4270N-C-001/all/169030_2019-08-15.txt`: missing cover
+#> * `../../data-raw/reports/STA-MW53OC-C-001/all/194017_2022-01-28.txt`: missing cover
+#> * `../../data-raw/reports/FED-JUU72L-C-001/all/201413_2021-07-27.txt`: no records
+#> * `../../data-raw/reports/STA-H3F77S-C-002/all/201481_2021-12-29.txt`: no records
+#> * `../../data-raw/reports/STA-O079OC-C-001/all/200919_2021-07-17.txt`: no records
+#> * `../../data-raw/reports/STA-XD82JF-C-001/all/210255_2022-10-24.txt`: no records
+
+# TODO: Identify reports that are missing a cover entry...