#!/usr/bin/env Rscript # This is a helper script to run the pipeline. # Choose how to execute the pipeline below. # See https://books.ropensci.org/targets/hpc.html # to learn about your options. 'usage: run.R all [--reporter --no-crew] run.R target ... [--shortcut --reporter --no-crew --debug] run.R -h | --help options: --reporter Reporter type for `tar_make()` [default: verbose_positives]. --no-crew Disable crew? -h --help Show this screen' -> doc library(docopt) opts <- docopt(doc) Sys.setenv("IN_TARGETS" = "true") Sys.setenv("ALLOW_DOWNLOADS" = "true") if (opts$debug) { str(opts) stop() } if (is.null(opts$reporter)) { opts$reporter <- "verbose_positives" } no_crew <- isTRUE(opts$no_crew) if (no_crew) { cli::cli_alert_info("Disabling {.field crew}.") } if (opts$all) { cli::cli_alert_info("Running all targets.") targets::tar_make(reporter = opts$reporter, use_crew = !no_crew) } else { cli::cli_alert_info("Running targets: {.and {.field {opts$targets}}}") targets::tar_make(targets::any_of(!!opts$targets), shortcut = opts$shortcut, reporter = opts$reporter, use_crew = !no_crew) } # targets::tar_make_clustermq(workers = 2) # nolint