|
- #!/usr/bin/env Rscript
-
- # This is a helper script to run the pipeline.
- # Choose how to execute the pipeline below.
- # See https://books.ropensci.org/targets/hpc.html
- # to learn about your options.
-
- 'usage:
- run.R all [--reporter <reporter> --no-crew]
- run.R target <targets>... [--shortcut --reporter <reporter> --no-crew --debug]
- run.R -h | --help
-
- options:
- --reporter <reporter> Reporter type for `tar_make()` [default: verbose_positives].
- --no-crew Disable crew?
- -h --help Show this screen' -> doc
-
- library(docopt)
- opts <- docopt(doc)
-
- Sys.setenv("IN_TARGETS" = "true")
- Sys.setenv("ALLOW_DOWNLOADS" = "true")
-
- if (opts$debug) {
- str(opts)
- stop()
- }
-
- if (is.null(opts$reporter)) {
- opts$reporter <- "verbose_positives"
- }
-
- no_crew <- isTRUE(opts$no_crew)
- if (no_crew) {
- cli::cli_alert_info("Disabling {.field crew}.")
- }
-
- if (opts$all) {
- cli::cli_alert_info("Running all targets.")
- targets::tar_make(reporter = opts$reporter, use_crew = !no_crew)
- } else {
- cli::cli_alert_info("Running targets: {.and {.field {opts$targets}}}")
- targets::tar_make(targets::any_of(!!opts$targets), shortcut = opts$shortcut, reporter = opts$reporter, use_crew = !no_crew)
- }
- # targets::tar_make_clustermq(workers = 2) # nolint
|