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on: |
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push: |
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pull_request: |
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# for now, CRON jobs only run on the default branch of the repo (i.e. usually on master) |
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schedule: |
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# * is a special character in YAML so you have to quote this string |
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- cron: "0 4 * * *" |
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name: R CMD Check via {tic} |
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jobs: |
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R-CMD-check: |
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runs-on: ${{ matrix.config.os }} |
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name: ${{ matrix.config.os }} (${{ matrix.config.r }}) |
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strategy: |
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fail-fast: false |
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matrix: |
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config: |
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# comment out lines if you do not want to build on certain platforms |
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- { os: windows-latest, r: "release" } |
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- { os: macOS-latest, r: "release", pkgdown: "true" } |
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- { os: macOS-latest, r: "devel" } |
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- { os: ubuntu-latest, r: "release" } |
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env: |
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# otherwise remotes::fun() errors cause the build to fail. Example: Unavailability of binaries |
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R_REMOTES_NO_ERRORS_FROM_WARNINGS: true |
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CRAN: ${{ matrix.config.cran }} |
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# we are not allowed to write to ~/.ccache on GH Actions |
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# setting some ccache options |
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CCACHE_BASEDIR: ${{ GITHUB.WORKSPACE }} |
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CCACHE_DIR: ${{ GITHUB.WORKSPACE }}/.ccache |
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CCACHE_NOHASHDIR: true |
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CCACHE_SLOPPINESS: include_file_ctime |
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# make sure to run `tic::use_ghactions_deploy()` to set up deployment |
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TIC_DEPLOY_KEY: ${{ secrets.TIC_DEPLOY_KEY }} |
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# prevent rgl issues because no X11 display is available |
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RGL_USE_NULL: true |
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# if you use bookdown or blogdown, replace "PKGDOWN" by the respective |
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# capitalized term. This also might need to be done in tic.R |
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BUILD_PKGDOWN: ${{ matrix.config.pkgdown }} |
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# macOS >= 10.15.4 linking |
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SDKROOT: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk |
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steps: |
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- uses: actions/checkout@v2 |
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- uses: r-lib/actions/setup-r@master |
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with: |
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r-version: ${{ matrix.config.r }} |
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Ncpus: 4 |
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# LaTeX. Installation time: |
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# Linux: ~ 1 min |
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# macOS: ~ 1 min 30s |
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# Windows: never finishes |
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- uses: r-lib/actions/setup-tinytex@v1 |
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if: runner.os != 'Windows' |
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- uses: r-lib/actions/setup-pandoc@master |
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# set date/week for use in cache creation |
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# https://github.community/t5/GitHub-Actions/How-to-set-and-access-a-Workflow-variable/m-p/42970 |
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# - cache R packages daily |
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# - cache ccache weekly -> 'ccache' helps rebuilding the package cache faster |
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- name: "[Cache] Prepare daily timestamp for cache" |
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if: runner.os != 'Windows' |
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id: date |
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run: echo "::set-output name=date::$(date '+%d-%m')" |
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- name: "[Cache] Prepare weekly timestamp for cache" |
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if: runner.os != 'Windows' |
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id: datew |
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run: echo "::set-output name=datew::$(date '+%Y-%V')" |
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- name: "[Cache] Cache R packages" |
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if: runner.os != 'Windows' |
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uses: pat-s/always-upload-cache@v1.1.4 |
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with: |
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path: ${{ env.R_LIBS_USER }} |
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key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{steps.date.outputs.date}} |
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restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-${{steps.date.outputs.date}} |
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- name: "[Cache] Cache ccache" |
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if: runner.os != 'Windows' |
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uses: pat-s/always-upload-cache@v1.1.4 |
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with: |
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path: ${{ env.CCACHE_DIR}} |
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key: ${{ runner.os }}-r-${{ matrix.config.r }}-ccache-${{steps.datew.outputs.datew}} |
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restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-ccache-${{steps.datew.outputs.datew}} |
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# install ccache and write config file |
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- name: "[Linux] ccache" |
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if: runner.os == 'Linux' |
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run: | |
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sudo apt install ccache libcurl4-openssl-dev |
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mkdir -p ~/.R && echo -e 'CC=ccache gcc -std=gnu99\nCXX=ccache g++\nFC=ccache gfortran\nF77=ccache gfortran' > $HOME/.R/Makevars |
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# install ccache and write config file |
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# mirror the setup described in https://github.com/rmacoslib/r-macos-rtools |
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- name: "[macOS] ccache" |
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if: runner.os == 'macOS' && matrix.config.r != 'devel' |
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run: | |
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brew install ccache |
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wget https://cran.r-project.org/bin/macosx/tools/clang-7.0.0.pkg |
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sudo installer -package clang-7.0.0.pkg -target / |
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mkdir -p ~/.R && echo -e 'CC=ccache /usr/local/clang7/bin/clang\nCXX=ccache /usr/local/clang7/bin/clang++\nCXX11=ccache /usr/local/clang7/bin/clang++\nCXX14=ccache /usr/local/clang7/bin/clang++\nCXX17=ccache /usr/local/clang7/bin/clang++\nF77=ccache gfortran/nCFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk\nCXXFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk\nCCFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk\nCPPFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk' > $HOME/.R/Makevars |
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# install ccache and write config file |
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# mirror the setup described in https://github.com/rmacoslib/r-macos-rtools |
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- name: "[macOS-devel] ccache" |
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if: runner.os == 'macOS' && matrix.config.r == 'devel' |
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run: | |
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brew install ccache |
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# install SDK 10.13 (High Sierra, used by CRAN) |
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wget -nv https://github.com/phracker/MacOSX-SDKs/releases/download/10.15/MacOSX10.13.sdk.tar.xz |
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tar fxz MacOSX10.13.sdk.tar.xz |
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sudo mv MacOSX10.13.sdk /Library/Developer/CommandLineTools/SDKs/ |
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rm -rf MacOSX10.13* |
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# install gfortran 8.2 (used by CRAN) |
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wget -nv https://github.com/fxcoudert/gfortran-for-macOS/releases/download/8.2/gfortran-8.2-Mojave.dmg |
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sudo hdiutil attach gfortran*.dmg |
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sudo installer -package /Volumes/gfortran*/gfortran*/gfortran*.pkg -target / |
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sudo hdiutil detach /Volumes/gfortran-8.2-Mojave |
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rm gfortran-8* |
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# set compiler flags |
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mkdir -p ~/.R && echo -e 'CC=ccache clang\nCPP=ccache clang\nCXX=ccache clang++\nCXX11=ccache clang++\nCXX14=ccache clang++\nCXX17=ccache clang++\nCFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.13.sdk\nCCFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.13.sdk\nCXXFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.13.sdk\nCPPFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.13.sdk\nF77=ccache /usr/local/gfortran/bin/gfortran\nFC=ccache /usr/local/gfortran/bin/gfortran' > $HOME/.R/Makevars |
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# for some strange Windows reason this step and the next one need to be decoupled |
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- name: "[Stage] Prepare" |
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run: | |
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Rscript -e "if (!requireNamespace('remotes')) install.packages('remotes', type = 'source')" |
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Rscript -e "if (getRversion() < '3.2' && !requireNamespace('curl')) install.packages('curl', type = 'source')" |
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- name: "[Stage] Install" |
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if: matrix.config.os != 'macOS-latest' || matrix.config.r != 'devel' |
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run: Rscript -e "remotes::install_github('ropensci/tic')" -e "print(tic::dsl_load())" -e "tic::prepare_all_stages()" -e "tic::before_install()" -e "tic::install()" |
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# macOS devel needs its own stage because we need to work with an options to suppress the usage of binaries |
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- name: "[Stage] Prepare & Install (macOS-devel)" |
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if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'devel' |
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run: | |
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echo -e 'options(Ncpus = 4, pkgType = "source", repos = structure(c(CRAN = "https://cloud.r-project.org/")))' > $HOME/.Rprofile |
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Rscript -e "remotes::install_github('ropensci/tic')" -e "print(tic::dsl_load())" -e "tic::prepare_all_stages()" -e "tic::before_install()" -e "tic::install()" |
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- name: "[Stage] Script" |
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run: Rscript -e 'tic::script()' |
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- name: "[Stage] After Success" |
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if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'release' |
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run: Rscript -e "tic::after_success()" |
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- name: "[Stage] Upload R CMD check artifacts" |
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if: failure() |
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uses: actions/upload-artifact@master |
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with: |
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name: ${{ runner.os }}-r${{ matrix.config.r }}-results |
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path: check |
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- name: "[Stage] Before Deploy" |
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run: | |
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Rscript -e "tic::before_deploy()" |
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- name: "[Stage] Deploy" |
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run: Rscript -e "tic::deploy()" |
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- name: "[Stage] After Deploy" |
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run: Rscript -e "tic::after_deploy()" |
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