switch from tic to my actions

.github/workflows/R-CMD-check.yaml

@@ -0,0 +1,78 @@
+# NOTE: This workflow is overkill for most R packages
+# check-standard.yaml is likely a better choice
+# usethis::use_github_action("check-standard") will install it.
+#
+# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
+# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
+on:
+  push:
+    branches:
+      - main
+  pull_request:
+    branches:
+      - main
+
+name: R-CMD-check
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macOS-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
+          - {os: windows-latest, r: '3.6'}
+          - {os: ubuntu-18.04,   r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-18.04,   r: 'release'}
+          - {os: ubuntu-18.04,   r: 'oldrel-1'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: r-lib/actions/setup-r@v1
+        id: install-r
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-pandoc@v1
+
+      - name: Install devel system dependencies
+        if: matrix.config.os == 'ubuntu-18.04' && matrix.config.r == 'devel'
+        run: sudo apt-get install -y libcurl4-openssl-dev
+
+      - uses: r-lib/actions/setup-r-dependencies@v1
+        with:
+          cache-version: 1
+          extra-packages: rcmdcheck
+
+      - uses: r-lib/actions/check-r-package@v1
+
+      - name: Show testthat output
+        if: always()
+        run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
+        shell: bash
+
+      - name: Code coverage
+        if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'release'
+        shell: Rscript {0}
+        run: |
+          pak::pkg_install("covr")
+          covr::codecov()
+
+      - name: Upload check results
+        if: failure()
+        uses: actions/upload-artifact@main
+        with:
+          name: ${{ matrix.config.os }}-r${{ matrix.config.r }}-results
+          path: check

.github/workflows/pkg-maintenance.yaml

@@ -0,0 +1,167 @@
+# Workflow inspired by:
+#   - https://github.com/rstudio/shinycoreci/blob/master/.github/workflows/call-rituals.yaml
+#   - https://github.com/r-lib/actions/blob/master/examples/lint.yaml
+#   - https://github.com/r-lib/actions/blob/master/examples/render-rmarkdown.yaml
+
+on:
+  pull_request:
+  push:
+    branches: main
+
+name: Package Maintenance
+
+jobs:
+  pkg-maintenance:
+    runs-on: ubuntu-latest
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      # only add lintr annotations
+      LINTR_COMMENT_BOT: false
+
+    steps:
+      - uses: actions/checkout@v2
+
+        # Make sure the PR branch is checked out for pull requests
+      - name: Git Pull (PR)
+        if: github.event_name == 'pull_request'
+        uses: r-lib/actions/pr-fetch@v1
+        with:
+          repo-token: ${{ github.token }}
+
+      - name: Git Config
+        run: |
+          git config user.name "${GITHUB_ACTOR}"
+          git config user.email "${GITHUB_ACTOR}@users.noreply.github.com"
+
+      - uses: r-lib/actions/setup-r@v1
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-pandoc@v1
+
+      - uses: r-lib/actions/setup-r-dependencies@v1
+        with:
+          extra-packages: |
+            lintr
+            styler
+            devtools
+            rmarkdown
+
+      - name: Tidy Description
+        run: |
+          Rscript -e 'usethis::use_tidy_description()'
+          git add -u && git commit -m 'Tidy DESCRIPTION (GitHub Actions)' || echo "No DESCRIPTION changes to commit"
+
+      - name: Document
+        run: |
+          Rscript -e 'roxygen2::roxygenise()'
+          git add man/\* NAMESPACE && git commit -m 'Document (GitHub Actions)' || echo "No documentation changes to commit"
+
+      - name: Build README and index
+        run: |
+          if [ -f "index.Rmd" ]; then
+            Rscript -e 'rmarkdown::render("index.Rmd", quiet = FALSE, output_options = list(html_preview = FALSE))'
+            git add index.md && git commit -m 'Re-build index.Rmd (GitHub Actions)' || echo "No index.Rmd changes to commit"
+          else
+            echo "No index.Rmd to build"
+          fi
+          if [ -f "README.Rmd" ]; then
+            Rscript -e 'devtools::build_readme(quiet = FALSE)'
+            git add man/figures/README\* README.md && git commit -m 'Re-build README.Rmd (GitHub Actions)' || echo "No readme changes to commit"
+          else
+            echo "No README.Rmd to build"
+          fi
+
+      - name: URL redirects
+        if: github.event_name == 'push'
+        run: |
+          Rscript -e 'pak::pkg_install("r-lib/urlchecker"); urlchecker::url_update()'
+          git add -u && git commit -m 'Update links (GitHub Actions)' || echo "No link changes to commit"
+
+      - name: Whitespace - Fix indents and trailing
+        run: |
+          # tabs to spaces and remove trailing whitespace
+          transform_indent_two_spaces <- styler::create_style_guide(
+            style_guide_name = "Indent with two spaces",
+            style_guide_version = "1.0.0",
+            indention = local({
+              ts <- styler::tidyverse_style()$indention
+              ts$unindent_fun_dec <- NULL
+              ts$update_indention_ref_fun_dec <- NULL
+              ts
+            }),
+            reindention = styler::specify_reindention(indention = 2, comments_only = FALSE)
+          )
+
+          styler::style_pkg(transformers = transform_indent_two_spaces)
+        shell: Rscript {0}
+
+      - name: Whitespace - Commit
+        run: |
+          git add -u && git commit -m 'Fix whitespace (GitHub Actions)' || echo 'No whitespace changes to commit'
+
+        # When pushing to main causes package maintenance, create a pull request
+      - name: Create Pull Request
+        id: create-pull-request
+        if: github.event_name == 'push'
+        uses: peter-evans/create-pull-request@v3
+        with:
+          base: main
+          branch: auto-pkg-maintenance
+          commit-message: "Package maintenance (Github Actions)"
+          title: "Automated package maintenance"
+          body: >
+            Automated package maintenance changes from
+            <${{github.server_url}}/${{github.repository}}/actions/runs/${{github.run_id}}>
+
+      - name: Notify Pull Request
+        if: steps.create-pull-request.outputs.pull-request-operation
+        run: |
+          echo "::notice title=Package Maintenance:: Pull request #${{ steps.create-pull-request.outputs.pull-request-number }} ${{ steps.create-pull-request.outputs.pull-request-operation }}: ${{ steps.create-pull-request.outputs.pull-request-url }}"
+
+        # If we're in a PR, then push back to the PR branch
+      - name: Git Push (PR)
+        uses: r-lib/actions/pr-push@v1
+        if: github.event_name == 'pull_request'
+        with:
+          repo-token: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Lint Package
+        if: github.event_name == 'pull_request'
+        run: |
+          # lint package and add notice-style file annotations
+          Sys.setlocale(locale = "C")
+          Sys.setenv(R_CLI_NUM_COLORS = 1)
+          lints <- lintr::lint_package(cache = FALSE)
+          informal_linters <- c(
+            "closed_curly_linter",
+            "commas_linter",
+            "function_left_parentheses_linter",
+            "line_length_linter",
+            "object_length_linter",
+            "object_name_linter",
+            "open_curly_linter",
+            "paren_brace_linter",
+            "pipe_continuation_linter",
+            "single_quotes_linter",
+            "spaces_inside_linter",
+            "spaces_left_parentheses_linter",
+            "trailing_blank_lines_linter",
+            "trailing_whitespace_linter"
+          )
+          for (lint in lints) {
+            msg <- sprintf(
+              "\n::%s file=%s,line=%d,col=%d,endColumn=%d,title=%s::%s",
+              if (lint$linter %in% informal_linters) "notice" else "warning",
+              lint$filename,
+              lint$line_number,
+              lint$ranges[[1]][[1]],
+              lint$ranges[[1]][[2]],
+              paste("lintr", lint$type, lint$linter, sep = " - "),
+              # print lintr message as GHA-compatible multiline log message
+              paste(capture.output(print(lint)), collapse = "%0A")
+            )
+            cat(msg)
+          }
+        shell: Rscript {0}

.github/workflows/pkgdown.yaml

@@ -0,0 +1,57 @@
+on:
+  push:
+    branches:
+     - main
+     - rc-**
+     - docs/**
+  pull_request:
+    branches:
+     - main
+
+name: pkgdown
+
+jobs:
+  pkgdown:
+    runs-on: ubuntu-18.04
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: r-lib/actions/setup-r@v1
+        id: install-r
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-pandoc@v1
+
+      - uses: r-lib/actions/setup-r-dependencies@v1
+        with:
+          needs: website
+
+      - name: Build Site
+        shell: Rscript {0}
+        run: |
+          pkgdown::build_site(new_process = FALSE)
+
+      - name: Set environment variable $GIT_BRANCH_NAME
+        id: git-branch-name
+        uses: EthanSK/git-branch-name-action@v1
+
+      - name: Deploy to Netlify
+        if: github.event_name == 'push'
+        id: netlify-deploy
+        uses: nwtgck/actions-netlify@v1.1
+        with:
+          publish-dir: 'reference'
+          production-branch: main
+          github-token: ${{ secrets.GITHUB_TOKEN }}
+          deploy-message:
+            'Deploy from GHA: ${{ github.event.head_commit.message }} (${{ github.sha }})'
+          enable-pull-request-comment: false
+          enable-commit-comment: false
+          enable-commit-status: true
+          alias: deploy-preview-${{ env.GIT_BRANCH_NAME }}
+        env:
+          NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }}
+          NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }}

.github/workflows/tic.yml

@@ -1,144 +0,0 @@
-## tic GitHub Actions template: linux-macos-windows-deploy
-## revision date: 2021-06-27
-on:
-  workflow_dispatch:
-  push:
-  pull_request:
-  # for now, CRON jobs only run on the default branch of the repo (i.e. usually on master)
-  schedule:
-    # * is a special character in YAML so you have to quote this string
-    - cron: "0 4 * * *"
-
-name: tic
-
-jobs:
-  all:
-    runs-on: ${{ matrix.config.os }}
-    timeout-minutes: 30
-
-    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
-
-    strategy:
-      fail-fast: false
-      matrix:
-        config:
-          # use a different tic template type if you do not want to build on all listed platforms
-          - { os: windows-latest, r: "release" }
-          - { os: macOS-latest, r: "release" }
-          - { os: ubuntu-latest, r: "devel" }
-          - { os: ubuntu-latest, r: "release", pkgdown: "true", latex: "true" }
-
-    env:
-      # otherwise remotes::fun() errors cause the build to fail. Example: Unavailability of binaries
-      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
-      CRAN: ${{ matrix.config.cran }}
-      # make sure to run `tic::use_ghactions_deploy()` to set up deployment
-      TIC_DEPLOY_KEY: ${{ secrets.TIC_DEPLOY_KEY }}
-      # prevent rgl issues because no X11 display is available
-      RGL_USE_NULL: true
-      # if you use bookdown or blogdown, replace "PKGDOWN" by the respective
-      # capitalized term. This also might need to be done in tic.R
-      BUILD_PKGDOWN: ${{ matrix.config.pkgdown }}
-      # macOS >= 10.15.4 linking
-      SDKROOT: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
-      # use GITHUB_TOKEN from GitHub to workaround rate limits in {remotes}
-      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-
-    steps:
-      - uses: actions/checkout@v2
-
-      - uses: r-lib/actions/setup-r@master
-        with:
-          r-version: ${{ matrix.config.r }}
-          Ncpus: 4
-
-      # LaTeX. Installation time:
-      # Linux: ~ 1 min
-      # macOS: ~ 1 min 30s
-      # Windows: never finishes
-      - uses: r-lib/actions/setup-tinytex@master
-        if: matrix.config.latex == 'true'
-
-      - uses: r-lib/actions/setup-pandoc@master
-
-      # set date/week for use in cache creation
-      # https://github.community/t5/GitHub-Actions/How-to-set-and-access-a-Workflow-variable/m-p/42970
-      # - cache R packages daily
-      - name: "[Cache] Prepare daily timestamp for cache"
-        if: runner.os != 'Windows'
-        id: date
-        run: echo "::set-output name=date::$(date '+%d-%m')"
-
-      - name: "[Cache] Cache R packages"
-        if: runner.os != 'Windows'
-        uses: pat-s/always-upload-cache@v2
-        with:
-          path: ${{ env.R_LIBS_USER }}
-          key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{steps.date.outputs.date}}
-          restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-${{steps.date.outputs.date}}
-
-      - name: "[Stage] [Linux] Install required system libs"
-        if: runner.os == 'Linux'
-        run: sudo apt install libcurl4-openssl-dev libgit2-dev
-
-      # for some strange Windows reason this step and the next one need to be decoupled
-      - name: "[Stage] Prepare"
-        run: |
-          Rscript -e "if (!requireNamespace('remotes')) install.packages('remotes', type = 'source')"
-          Rscript -e "if (getRversion() < '3.2' && !requireNamespace('curl')) install.packages('curl', type = 'source')"
-
-      - name: "[Stage] [macOS] Install libgit2"
-        if: runner.os == 'macOS'
-        run: brew install libgit2
-
-      - name: "[Stage] [macOS] Install system libs for pkgdown"
-        if: runner.os == 'macOS' && matrix.config.pkgdown != ''
-        run: brew install harfbuzz fribidi
-
-      - name: "[Stage] [Linux] Install system libs for pkgdown"
-        if: runner.os == 'Linux' && matrix.config.pkgdown != ''
-        run: sudo apt install libharfbuzz-dev libfribidi-dev
-
-      # Try to automatically check for system dependencies and install them
-      # Note: this might not catch all required system libs and manual action might be needed
-      - name: "[Stage] [Linux] Install linux system dependencies"
-        if: runner.os == 'Linux'
-        run: |
-          while read -r cmd
-          do
-            eval sudo $cmd
-          done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
-
-      - name: "[Stage] Install"
-        if: matrix.config.os != 'macOS-latest' || matrix.config.r != 'devel'
-        run: Rscript -e "remotes::install_github('ropensci/tic')" -e "print(tic::dsl_load())" -e "tic::prepare_all_stages()" -e "tic::before_install()" -e "tic::install()"
-
-      # macOS devel needs its own stage because we need to work with an option to suppress the usage of binaries
-      - name: "[Stage] Prepare & Install (macOS-devel)"
-        if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'devel'
-        run: |
-          echo -e 'options(Ncpus = 4, pkgType = "source", repos = structure(c(CRAN = "https://cloud.r-project.org/")))' > $HOME/.Rprofile
-          Rscript -e "remotes::install_github('ropensci/tic')" -e "print(tic::dsl_load())" -e "tic::prepare_all_stages()" -e "tic::before_install()" -e "tic::install()"
-
-      - name: "[Stage] Script"
-        run: Rscript -e 'tic::script()'
-
-      - name: "[Stage] After Success"
-        if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'release'
-        run: Rscript -e "tic::after_success()"
-
-      - name: "[Stage] Upload R CMD check artifacts"
-        if: failure()
-        uses: actions/upload-artifact@v2
-        with:
-          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
-          path: check
-      - name: "[Stage] Before Deploy"
-        run: |
-          Rscript -e "tic::before_deploy()"
-
-      - name: "[Stage] Deploy"
-        run: Rscript -e "tic::deploy()"
-
-      - name: "[Stage] After Deploy"
-        run: Rscript -e "tic::after_deploy()"

DESCRIPTION

@@ -41,6 +41,7 @@ Suggests:
 VignetteBuilder: 
     knitr
 Config/testthat/edition: 3
+Config/Needs/website: pkgdown
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
 RoxygenNote: 7.1.1

tic.R

@@ -1,8 +0,0 @@
-# installs dependencies, runs R CMD check, runs covr::codecov()
-do_package_checks()
-
-if (ci_on_ghactions() && ci_has_env("BUILD_PKGDOWN")) {
-  # creates pkgdown site and pushes to gh-pages branch
-  # only for the runner with the "BUILD_PKGDOWN" env var set
-  do_pkgdown()
-}