|
|
|
@@ -1,182 +0,0 @@ |
|
|
|
on: |
|
|
|
push: |
|
|
|
pull_request: |
|
|
|
# for now, CRON jobs only run on the default branch of the repo (i.e. usually on master) |
|
|
|
schedule: |
|
|
|
# weekly Monday morning |
|
|
|
- cron: "0 6 * * 1" |
|
|
|
|
|
|
|
name: R CMD Check |
|
|
|
|
|
|
|
jobs: |
|
|
|
R-CMD-check: |
|
|
|
runs-on: ${{ matrix.config.os }} |
|
|
|
|
|
|
|
name: ${{ matrix.config.os }} (${{ matrix.config.r }}) |
|
|
|
|
|
|
|
strategy: |
|
|
|
fail-fast: false |
|
|
|
matrix: |
|
|
|
config: |
|
|
|
# comment out lines if you do not want to build on certain platforms |
|
|
|
- { os: windows-latest, r: "release" } |
|
|
|
- { os: macOS-latest, r: "release", pkgdown: "true" } |
|
|
|
- { os: macOS-latest, r: "devel" } |
|
|
|
- { os: ubuntu-latest, r: "release" } |
|
|
|
|
|
|
|
env: |
|
|
|
# otherwise remotes::fun() errors cause the build to fail. Example: Unavailability of binaries |
|
|
|
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true |
|
|
|
CRAN: ${{ matrix.config.cran }} |
|
|
|
# we are not allowed to write to ~/.ccache on GH Actions |
|
|
|
# setting some ccache options |
|
|
|
CCACHE_BASEDIR: ${{ GITHUB.WORKSPACE }} |
|
|
|
CCACHE_DIR: ${{ GITHUB.WORKSPACE }}/.ccache |
|
|
|
CCACHE_NOHASHDIR: true |
|
|
|
CCACHE_SLOPPINESS: include_file_ctime |
|
|
|
# make sure to run `tic::use_ghactions_deploy()` to set up deployment |
|
|
|
TIC_DEPLOY_KEY: ${{ secrets.TIC_DEPLOY_KEY }} |
|
|
|
# prevent rgl issues because no X11 display is available |
|
|
|
RGL_USE_NULL: true |
|
|
|
# if you use bookdown or blogdown, replace "PKGDOWN" by the respective |
|
|
|
# capitalized term. This also might need to be done in tic.R |
|
|
|
BUILD_PKGDOWN: ${{ matrix.config.pkgdown }} |
|
|
|
# macOS >= 10.15.4 linking |
|
|
|
SDKROOT: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk |
|
|
|
|
|
|
|
steps: |
|
|
|
- uses: actions/checkout@v2 |
|
|
|
|
|
|
|
- uses: r-lib/actions/setup-r@master |
|
|
|
with: |
|
|
|
r-version: ${{ matrix.config.r }} |
|
|
|
Ncpus: 4 |
|
|
|
|
|
|
|
# LaTeX. Installation time: |
|
|
|
# Linux: ~ 1 min |
|
|
|
# macOS: ~ 1 min 30s |
|
|
|
# Windows: never finishes |
|
|
|
- uses: r-lib/actions/setup-tinytex@v1 |
|
|
|
if: runner.os != 'Windows' |
|
|
|
|
|
|
|
- uses: r-lib/actions/setup-pandoc@master |
|
|
|
|
|
|
|
# set date/week for use in cache creation |
|
|
|
# https://github.community/t5/GitHub-Actions/How-to-set-and-access-a-Workflow-variable/m-p/42970 |
|
|
|
# - cache R packages daily |
|
|
|
# - cache ccache weekly -> 'ccache' helps rebuilding the package cache faster |
|
|
|
- name: "[Cache] Prepare daily timestamp for cache" |
|
|
|
if: runner.os != 'Windows' |
|
|
|
id: date |
|
|
|
run: echo "::set-output name=date::$(date '+%d-%m')" |
|
|
|
|
|
|
|
- name: "[Cache] Prepare weekly timestamp for cache" |
|
|
|
if: runner.os != 'Windows' |
|
|
|
id: datew |
|
|
|
run: echo "::set-output name=datew::$(date '+%Y-%V')" |
|
|
|
|
|
|
|
- name: "[Cache] Cache R packages" |
|
|
|
if: runner.os != 'Windows' |
|
|
|
uses: pat-s/always-upload-cache@v1.1.4 |
|
|
|
with: |
|
|
|
path: ${{ env.R_LIBS_USER }} |
|
|
|
key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{steps.date.outputs.date}} |
|
|
|
restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-${{steps.date.outputs.date}} |
|
|
|
|
|
|
|
- name: "[Cache] Cache ccache" |
|
|
|
if: runner.os != 'Windows' |
|
|
|
uses: pat-s/always-upload-cache@v1.1.4 |
|
|
|
with: |
|
|
|
path: ${{ env.CCACHE_DIR}} |
|
|
|
key: ${{ runner.os }}-r-${{ matrix.config.r }}-ccache-${{steps.datew.outputs.datew}} |
|
|
|
restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-ccache-${{steps.datew.outputs.datew}} |
|
|
|
|
|
|
|
# install ccache and write config file |
|
|
|
- name: "[Linux] ccache" |
|
|
|
if: runner.os == 'Linux' |
|
|
|
run: | |
|
|
|
sudo apt install ccache libcurl4-openssl-dev |
|
|
|
mkdir -p ~/.R && echo -e 'CC=ccache gcc -std=gnu99\nCXX=ccache g++\nFC=ccache gfortran\nF77=ccache gfortran' > $HOME/.R/Makevars |
|
|
|
|
|
|
|
# install ccache and write config file |
|
|
|
# mirror the setup described in https://github.com/rmacoslib/r-macos-rtools |
|
|
|
- name: "[macOS] ccache" |
|
|
|
if: runner.os == 'macOS' && matrix.config.r != 'devel' |
|
|
|
run: | |
|
|
|
brew install ccache |
|
|
|
wget https://cran.r-project.org/bin/macosx/tools/clang-7.0.0.pkg |
|
|
|
sudo installer -package clang-7.0.0.pkg -target / |
|
|
|
mkdir -p ~/.R && echo -e 'CC=ccache /usr/local/clang7/bin/clang\nCXX=ccache /usr/local/clang7/bin/clang++\nCXX11=ccache /usr/local/clang7/bin/clang++\nCXX14=ccache /usr/local/clang7/bin/clang++\nCXX17=ccache /usr/local/clang7/bin/clang++\nF77=ccache gfortran/nCFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk\nCXXFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk\nCCFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk\nCPPFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk' > $HOME/.R/Makevars |
|
|
|
|
|
|
|
# install ccache and write config file |
|
|
|
# mirror the setup described in https://github.com/rmacoslib/r-macos-rtools |
|
|
|
- name: "[macOS-devel] ccache" |
|
|
|
if: runner.os == 'macOS' && matrix.config.r == 'devel' |
|
|
|
run: | |
|
|
|
brew install ccache |
|
|
|
# install SDK 10.13 (High Sierra, used by CRAN) |
|
|
|
wget -nv https://github.com/phracker/MacOSX-SDKs/releases/download/10.15/MacOSX10.13.sdk.tar.xz |
|
|
|
tar fxz MacOSX10.13.sdk.tar.xz |
|
|
|
sudo mv MacOSX10.13.sdk /Library/Developer/CommandLineTools/SDKs/ |
|
|
|
rm -rf MacOSX10.13* |
|
|
|
# install gfortran 8.2 (used by CRAN) |
|
|
|
wget -nv https://github.com/fxcoudert/gfortran-for-macOS/releases/download/8.2/gfortran-8.2-Mojave.dmg |
|
|
|
sudo hdiutil attach gfortran*.dmg |
|
|
|
sudo installer -package /Volumes/gfortran*/gfortran*/gfortran*.pkg -target / |
|
|
|
sudo hdiutil detach /Volumes/gfortran-8.2-Mojave |
|
|
|
rm gfortran-8* |
|
|
|
# set compiler flags |
|
|
|
mkdir -p ~/.R && echo -e 'CC=ccache clang\nCPP=ccache clang\nCXX=ccache clang++\nCXX11=ccache clang++\nCXX14=ccache clang++\nCXX17=ccache clang++\nCFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.13.sdk\nCCFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.13.sdk\nCXXFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.13.sdk\nCPPFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.13.sdk\nF77=ccache /usr/local/gfortran/bin/gfortran\nFC=ccache /usr/local/gfortran/bin/gfortran' > $HOME/.R/Makevars |
|
|
|
|
|
|
|
# install xquartz for {sysfonts} |
|
|
|
- name: "[macOS] xquartz" |
|
|
|
if: runner.os == 'macOS' |
|
|
|
run: | |
|
|
|
brew cask install xquartz |
|
|
|
|
|
|
|
# for some strange Windows reason this step and the next one need to be decoupled |
|
|
|
- name: "[Stage] Prepare" |
|
|
|
run: | |
|
|
|
Rscript -e "if (!requireNamespace('remotes')) install.packages('remotes', type = 'source')" |
|
|
|
Rscript -e "if (getRversion() < '3.2' && !requireNamespace('curl')) install.packages('curl', type = 'source')" |
|
|
|
|
|
|
|
- name: "[Stage] Install" |
|
|
|
if: matrix.config.os != 'macOS-latest' || matrix.config.r != 'devel' |
|
|
|
run: Rscript -e "remotes::install_github('ropensci/tic')" -e "print(tic::dsl_load())" -e "tic::prepare_all_stages()" -e "tic::before_install()" -e "tic::install()" |
|
|
|
|
|
|
|
# macOS devel needs its own stage because we need to work with an options to suppress the usage of binaries |
|
|
|
- name: "[Stage] Prepare & Install (macOS-devel)" |
|
|
|
if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'devel' |
|
|
|
run: | |
|
|
|
echo -e 'options(Ncpus = 4, pkgType = "source", repos = structure(c(CRAN = "https://cloud.r-project.org/")))' > $HOME/.Rprofile |
|
|
|
Rscript -e "remotes::install_github('ropensci/tic')" -e "print(tic::dsl_load())" -e "tic::prepare_all_stages()" -e "tic::before_install()" -e "tic::install()" |
|
|
|
|
|
|
|
- name: "[Stage] Script" |
|
|
|
run: Rscript -e 'tic::script()' |
|
|
|
|
|
|
|
- name: "[Stage] After Success" |
|
|
|
if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'release' |
|
|
|
run: Rscript -e "tic::after_success()" |
|
|
|
|
|
|
|
- name: "[Stage] Upload R CMD check artifacts" |
|
|
|
if: failure() |
|
|
|
uses: actions/upload-artifact@master |
|
|
|
with: |
|
|
|
name: ${{ runner.os }}-r${{ matrix.config.r }}-results |
|
|
|
path: check |
|
|
|
- name: "[Stage] Before Deploy" |
|
|
|
run: | |
|
|
|
Rscript -e "tic::before_deploy()" |
|
|
|
|
|
|
|
- name: "[Stage] Deploy" |
|
|
|
run: Rscript -e "tic::deploy()" |
|
|
|
|
|
|
|
- name: "[Stage] After Deploy" |
|
|
|
run: Rscript -e "tic::after_deploy()" |
|
|
|
|
|
|
|
- name: Update status dashboard at gadenbuie/status |
|
|
|
uses: peter-evans/repository-dispatch@v1 |
|
|
|
if: github.ref == 'refs/heads/HEAD' && matrix.config.os == 'macOS-latest' && matrix.config.r == 'release' |
|
|
|
with: |
|
|
|
token: ${{ secrets.TIC_UPDATE }} |
|
|
|
event-type: status-update |
